miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus



ABOUT THIS RECORD

ID: MNEST002378
species: Raphanus raphanistrum subsp. maritimus
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCATCATCATCATCATCATCA

miRNA*
ATTCTGGTGAGGATGAGATT

mismatches: 4
bulges: 1

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pre-miRNA
CAGATTCTGGTGAGGATGAGATTTGGGAAGATTGTGGAAGGCTTGAAGTCCAAGATAAAGGCAAGTCTAAGGATGCGGAAGAGATCCTCATTATCATCAT
CGTCATCGTCGTCATCATCATCATCATCATCA


dot-bracket secondary structure
..(((..((((((.((((((((.(((((.(((.((((.(((((((................)))))))...((((.(((.....))).)))).)))).))
).)).)))..))).))))).))))))..))).



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-598: 0.0000005
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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